PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof002037

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 336aa MW: 35891.1 Da PI: 5.0184

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-32966	PU_ref	plantGDB	View CDS
PUT-157a-Saccharum_officinarum-728133731	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.9	5.9e-15	144	197	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k+ rr+ +NRe+ArrsR+RK+a + Le v L++eN L k+l ++++++ Sof002037 144 AKKMRRMLSNRESARRSRKRKQAHLNDLESQVSRLTSENAYLLKRLADMTQKYK 197 699************************************999966655555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-14	141	205	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.369	143	195	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-12	144	197	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.6E-13	145	197	No hit	No description
SuperFamily	SSF57959	4.34E-12	145	196	No hit	No description
CDD	cd14702	1.28E-20	146	196	No hit	No description
PROSITE pattern	PS00036	0	148	163	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.7E-24	212	317	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
PIRSPPWSTR YEKGSDLAPG VAGGGSDDDD VVEVSCGGRG GGDPGSYAAV LKRKLDLYCA 60 AVAKSMEAKS QESSLGYPNS QASDTSQLIS QASFDGDIDG AGLVTNSNVI EDDDFQGKPA 120 NSGTSKELSD DDGDLEETID PSNAKKMRRM LSNRESARRS RKRKQAHLND LESQVSRLTS 180 ENAYLLKRLA DMTQKYKDAS LDNKNLTVDI ETMRRKVNIA EEAVRRLTGT TLMLSTAFDK 240 PASSTPLSSC ASDAASASVA IEDSMKHXLQ APLQNGQIKL DIPXAAIPLT SGVMGTKPAS 300 LQRVASLENL QKRIVGDSMH SETASTFSGX EALADR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	RRSRKRK
2	157	164	RRSRKRKQ
3	159	164	SRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.5829	0.0	crown\| inflorescence\| meristem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002442478.1	0.0	light-inducible protein CPRF2 isoform X2
TrEMBL	C5YRE4	0.0	C5YRE4_SORBI; Uncharacterized protein
STRING	Sb08g020600.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-30	bZIP family protein