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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof002295 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 310aa MW: 33820.1 Da PI: 4.7577 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17394218 | PU_unref | Unigene | View CDS |
| PUT-157a-Saccharum_officinarum-323133728 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 221.6 | 3.8e-68 | 15 | 309 | 108 | 374 |
GRAS 108 ge...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvk 197
+ +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++ ++ ++e+g+r++kfA+ +gvpf+f+++++ +l++l+l++L+++
Sof002295 15 ASsepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGVPFSFRAVHHAgDLAELDLDALDLR 114
3334699*************************889***********988889999999************************97767************* PP
GRAS 198 p...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.............sFlerflealeyysalfdsleaklpresee 281
alaVn+v +l ++ ++ + rd++ +++l P+vv+vve+ead+ + Fl+ f e l+++sa +dsle+++p++s+e
Sof002295 115 DggaTTALAVNCVNSLRGVV--PGGARR-RDAFAASLRRLDPRVVTVVEEEADLVAFdpdaseesgdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNE 211
*888889************9..555555.99********************9984434678888999999****************************** PP
GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
r +Er gr+iv++v+c +e+ er+et+ +W +r+++aGF+pv++se++a+++++llr++ +g+++ + + ++l Wk++pLv++SaWr
Sof002295 212 RLALERG-AGRAIVDLVSCPASESMERRETAVSWARRMRSAGFSPVAFSEDVADDVRSLLRRYR-EGWSMRDAglddsaaGAGVFLAWKEQPLVWASAWR 309
*******.*******************************************************9.88888844444455355566**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
PTRPILESFL EAAAASSEPQ RFHILDLSNT FCTQWPTLLE ALATRSADDT PHLSITTVVS 60
AAPSAPTAAV QRVMREIGQR MEKFARLMGV PFSFRAVHHA GDLAELDLDA LDLRDGGATT 120
ALAVNCVNSL RGVVPGGARR RDAFAASLRR LDPRVVTVVE EEADLVAFDP DASEESGDTE 180
AAFLKVFGEG LRFFSAYMDS LEESFPKTSN ERLALERGAG RAIVDLVSCP ASESMERRET 240
AVSWARRMRS AGFSPVAFSE DVADDVRSLL RRYREGWSMR DAGLDDSAAG AGVFLAWKEQ 300
PLVWASAWRP
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In P3 leaf primordium, expressed ubiquitously in the L1 layer and in the inner cells at lower levels. Not limited to the developing stomata until the last cell divisions. {ECO:0000269|PubMed:12974810}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves and roots. Detected in the stele, the endodermis and part of the cortex. {ECO:0000269|PubMed:12974810, ECO:0000269|PubMed:17446396}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}. |
| UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}. |
