PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002455
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 298aa    MW: 31254.2 Da    PI: 9.5583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17346917PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-705133725PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20128177255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  Sof002455 128 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 177
                59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.33E-33127187No hitNo description
PROSITE profilePS5103223.604128185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-33128186IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23128186IPR016177DNA-binding domain
SMARTSM003801.8E-38128191IPR001471AP2/ERF domain
PfamPF008471.4E-14129177IPR001471AP2/ERF domain
PRINTSPR003672.6E-11129140IPR001471AP2/ERF domain
PRINTSPR003672.6E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAATTIDWHG SNAALPAALY GVADSKELVR ALAPPMQQAV PTISFAYPCS GVEQQSAAGS  60
FLGAGGGSGL LTPAQILQVQ SRLQFLRRPA AAGGGALAAV ATQQMKRQGV PHAPAPAPLP  120
ARPAVSKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDS AAFRLRGDSA  180
RLNFPELRRG GQHLGPPLHA AVDAKLHAIC NGTLPQSQSN ATAATATTTT TPSSFSSASP  240
HVKSEPGCSG SESSFSADGD VSSTGSSDVV PEMPXLLDFS ESRHWDEVXK SLXHXGAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20124185163ATERF1
3gcc_A1e-20124185163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.90640.0seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465715.11e-151ethylene-responsive transcription factor RAP2-13
TrEMBLC5WUS41e-150C5WUS4_SORBI; Uncharacterized protein
STRINGSb01g044410.11e-151(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-37related to AP2 4