PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002513
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 293aa    MW: 32800.6 Da    PI: 5.9632
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17246525PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-20112PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.41.3e-86225143294
       GRAS  43 ayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppsl 142
                ay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P++++++++aN aI+ea +geer+HiiDfdi+qG Q+++L+q L + +++p +l
  Sof002513   2 AYLVEGLAARIVASGNGIYKALTCKDPP---TLYQLSAMQILFEICPCFRLGFMAANYAIVEACKGEERLHIIDFDINQGSQYITLIQFLKNNANKPRHL 98 
                79*************************9...89999**************************************************************** PP

       GRAS 143 RiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                RiTgv++pe++      l+ +g+rL+k+Ae +gv+fef++ v  ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l Pk+v+
  Sof002513  99 RITGVDDPETVqrPIGGLRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLHPKLVT 197
                *********99878899***********************.799******************************************************** PP

       GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                +veq+a++n+++Fl rf e  +yysalfdsl+a+lpres +r++vEr++l++++
  Sof002513 198 LVEQDANTNTAPFLPRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAEKL 251
                **************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.6811293IPR005202Transcription factor GRAS
PfamPF035144.7E-842251IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
XAYLVEGLAA RIVASGNGIY KALTCKDPPT LYQLSAMQIL FEICPCFRLG FMAANYAIVE  60
ACKGEERLHI IDFDINQGSQ YITLIQFLKN NANKPRHLRI TGVDDPETVQ RPIGGLRVIG  120
QRLEKLAEDC GVSFEFRAVG ANIGDVTPAM LDCRPGEALV VNFAFQLHHL PDESVSIMNE  180
RDQLLRMVKG LHPKLVTLVE QDANTNTAPF LPRFREVYDY YSALFDSLDA TLPRESPDRM  240
NVERQCLAEK LLTSWLVKVL DLWRSTKLLG NGNQNDIGCF PPCPFNNHVI SGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-39225160299Protein SCARECROW
5b3h_D4e-39225160299Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.183790.0bud| crown| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312901.10.0scarecrow-like protein 1
RefseqXP_021312902.10.0scarecrow-like protein 1
SwissprotQ9SDQ31e-122SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1B6Q7E50.0A0A1B6Q7E5_SORBI; Uncharacterized protein
STRINGSb03g041760.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-124SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]