PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002634
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 285aa    MW: 31800.1 Da    PI: 9.5412
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17340456PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-109901PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.7e-091491861954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Sof002634 149 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 186
                664459******************************98 PP
2BELL109.32.3e-351182172
       BELL  1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
               erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+av+g g+a+pYt+lAl++iSrhFr+L+da+  q+
  Sof002634 11 ERQDLQNKVSALMALLDQVDRKYRHYHHQMQIVMSSFDAVVGAGAARPYTALALQTISRHFRSLRDAVGAQV 82
               799*****************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-13180IPR006563POX domain
PfamPF075268.8E-34478IPR006563POX domain
PROSITE profilePS5007112.001127190IPR001356Homeobox domain
CDDcd000863.05E-11130191No hitNo description
SMARTSM003891.7E-9130194IPR001356Homeobox domain
SuperFamilySSF466891.45E-17131197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-28133196IPR009057Homeodomain-like
PfamPF059201.7E-17147186IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
XSSAAELTPS ERQDLQNKVS ALMALLDQVD RKYRHYHHQM QIVMSSFDAV VGAGAARPYT  60
ALALQTISRH FRSLRDAVGA QVQSLRRSLG EKDTSAQGGG LSRLRYIDQQ LRQQRAMQQF  120
GMMQQPQHAW RPQRGLPESA VSVLRAWLFE HFLHPYPKDS EKLMLARQTG LSRGQVSNWF  180
INARVRLWKP MIEEMYKEEF GAEMDSHSSS ENAAGNKGKA DEAISSEDHE EFQSPSSAAN  240
AKHGAAATGH HLNAFKSEAI GGLDAGRRRL FSPDGALGPY XDHQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-17136194563Homeobox protein Meis2
3k2a_B3e-17136194563Homeobox protein Meis2
4xrm_A4e-17136194563Homeobox protein Meis2
4xrm_B4e-17136194563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.93050.0bud| callus| crown| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465808.11e-177BEL1-like homeodomain protein 7
RefseqXP_021307660.11e-177BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-104BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C91e-177A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGSb01g046170.11e-176(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.15e-98BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]