PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002636
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 285aa    MW: 31104 Da    PI: 6.502
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17300253PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-118284PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS177.78.8e-55425540300
       GRAS  40 RlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp. 136
                R a+y++eAL   l++      ++ +++ ts+ +++ +l a+k fs++sP+l+f+++ta qa+l+++++   +++ iiDfd++ G+QW+++lq+La R+ 
  Sof002636   4 RSASYLKEALLLALTD-----GHQGSTRLTSPLDVALKLGAYKSFSDLSPVLQFANFTATQALLDEIASTtsSCIRIIDFDLGVGGQWASFLQELAHRRg 98 
                99**************.....6677788888888*******************************998877799************************98 PP

       GRAS 137 ...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvk 232
                   ++ p+l++T+++s++s++  el+ t+e+L++fA  lg+pfef+++   +l+++++ eL   + +E++aV+l +          +l+     +L+lvk
  Sof002636  99 tgnSPLPMLKLTAFVSSASHHPLELHLTRENLSQFAVDLGIPFEFTAI---NLDAFDPAELIPPTaDEVVAVCLPVGCSART---PPLPM----LLQLVK 188
                8767789****************************************9...9*******9965558********99766554...56666....****** PP

       GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                +l Pk+ v +++ +d+++++F ++f+++++ ++ l++sl+a  ++++++++k+Er+l++++++++v  
  Sof002636 189 QLAPKIAVAIDHGSDRGDPPFSQHFMNCFHSCMFLLESLDAA-GTNADAASKIERFLIQPRVEDAVLG 255
                ***************************************999.8999*****************9964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.0331285IPR005202Transcription factor GRAS
PfamPF035143.1E-524255IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
XFLRSASYLK EALLLALTDG HQGSTRLTSP LDVALKLGAY KSFSDLSPVL QFANFTATQA  60
LLDEIASTTS SCIRIIDFDL GVGGQWASFL QELAHRRGTG NSPLPMLKLT AFVSSASHHP  120
LELHLTRENL SQFAVDLGIP FEFTAINLDA FDPAELIPPT ADEVVAVCLP VGCSARTPPL  180
PMLLQLVKQL APKIAVAIDH GSDRGDPPFS QHFMNCFHSC MFLLESLDAA GTNADAASKI  240
ERFLIQPRVE DAVLGPRKAE RQWLGRQCYI RRFCSVPXAT LRXTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-133025988312Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.91730.0bud| crown| inflorescence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168417.11e-172uncharacterized protein LOC100382187
TrEMBLA0A3L6FPS31e-171A0A3L6FPS3_MAIZE; Scarecrow-like protein 6
TrEMBLC0PMC81e-174C0PMC8_MAIZE; GRAS transcription factor
STRINGGRMZM5G825321_P021e-171(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-55GRAS family protein