PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002667
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-X1
Protein Properties Length: 283aa    MW: 31062.4 Da    PI: 8.8453
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17314598PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-130710PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.55.1e-071635119
   zf-NF-X1  1 CGkHkCqklCHeGpCpp.Cp 19
               CG+H+C + CH+GpC++ C+
  Sof002667 16 CGRHRCPERCHRGPCDEtCR 35
               *******************8 PP
2zf-NF-X119.32.5e-066988120
   zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
               CG+H C++ C+ G+CppC++
  Sof002667 69 CGRHACKRRCCAGDCPPCSE 88
               ******************85 PP
3zf-NF-X120.88.3e-0796115120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                CG+HkC ++CH+G C pCp+
  Sof002667  96 CGNHKCLSTCHRGVCSPCPL 115
                ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.30E-8655No hitNo description
SMARTSM004380.00291636IPR000967Zinc finger, NF-X1-type
PfamPF014222.1E-41635IPR000967Zinc finger, NF-X1-type
CDDcd060084.30E-859107No hitNo description
SMARTSM004380.00696988IPR000967Zinc finger, NF-X1-type
PfamPF014223.8E-46987IPR000967Zinc finger, NF-X1-type
CDDcd060081.34E-986134No hitNo description
SMARTSM004380.00596115IPR000967Zinc finger, NF-X1-type
PfamPF014224.0E-596114IPR000967Zinc finger, NF-X1-type
SMARTSM0043869159174IPR000967Zinc finger, NF-X1-type
PfamPF01422140163173IPR000967Zinc finger, NF-X1-type
SMARTSM00438130182200IPR000967Zinc finger, NF-X1-type
PfamPF014224.3182191IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
XEAATCGSTC EKVLGCGRHR CPERCHRGPC DETCRLVITK ACRCGGLKKE VPCYQELTCE  60
RKCQRLRNCG RHACKRRCCA GDCPPCSETC DRKLRCGNHK CLSTCHRGVC SPCPLMKTIS  120
CACGKTCFEV PCGTEKNQKP PKCSKKCSIP CLCRHKLECR PHKCHYRACP PCKLTCGEEL  180
SCGHTCKERC HGPISPPNPE VTLKPTKKKX GKAHRKLHLD TVPTMQRSVF GAMLLSASLA  240
KNVLCLVANG GLFAVKIYGG ILFFVATINV QNLACVKKPI DSP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.98030.0bud| callus| crown| inflorescence| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968270.11e-129NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK82e-92NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1D6FEE81e-129A0A1D6FEE8_MAIZE; Sequence-specific DNA binding transcription factor
TrEMBLA0A1D6FEF41e-129A0A1D6FEF4_MAIZE; Sequence-specific DNA binding transcription factor
STRINGPavir.J07154.1.p1e-129(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-88sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors