PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002764
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family EIL
Protein Properties Length: 277aa    MW: 30980.8 Da    PI: 9.619
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17262113PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-109600PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3316.57.2e-97727260317
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-T CS
       EIN3  60 MlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppq 159
                Mlk ++vc a+Gf  giip+kgkpv+gasd++ aW ke+v+fd+ngpaai ky+++nl++++++s    +++++hsl++lqD+tlgSLLs+lmqhcdppq
  Sof002764   7 MLKLIQVCSARGFGGGIIPDKGKPVSGASDNIIAWRKENVKFDKNGPAAIEKYESDNLVSANAQSG---GTKNQHSLMDLQDATLGSLLSSLMQHCDPPQ 103
                *************************************************************98888...88***************************** PP

                TS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S-- CS
       EIN3 160 rrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecat 259
                r++plekgv+p WWP+Gke+ww +lgl+  q  ppykkphdlkk+wk +vLt vikhmsp++++ir+++r+sk+lqdkm+akes ++l+vl++ee+++++
  Sof002764 104 RKYPLEKGVPPTWWPSGKEEWWIALGLPSGQI-PPYKKPHDLKKVWKAGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLIWLRVLQREESLVRR 202
                ******************************99.9****************************************************************99 PP

                XXXX....XX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.......XXXXXXXXXXXXXXX CS
       EIN3 260 vsah....ss.slrkqspkvtlsceqkedvegkkeskikhvqavktta.......gfpvvrkrkkkpses 317
                        ++ s+  +++  t+s+++++dv g ++  +++++++++++        ++ v kr++++++s
  Sof002764 203 TDNGvleiTQsSMPVDRNGDTYSTSNEYDVYGFEDAPVSTSSKDEEQDlspvaqsAVEHVPKRRRERAHS 272
                8888654422355559999************888888898888888887888877666677777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.6E-967197No hitNo description
Gene3DG3DSA:1.10.3180.107.6E-6972204IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.22E-5977200IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
XSTRQPMLKL IQVCSARGFG GGIIPDKGKP VSGASDNIIA WRKENVKFDK NGPAAIEKYE  60
SDNLVSANAQ SGGTKNQHSL MDLQDATLGS LLSSLMQHCD PPQRKYPLEK GVPPTWWPSG  120
KEEWWIALGL PSGQIPPYKK PHDLKKVWKA GVLTGVIKHM SPNFDKIRNH VRKSKCLQDK  180
MTAKESLIWL RVLQREESLV RRTDNGVLEI TQSSMPVDRN GDTYSTSNEY DVYGFEDAPV  240
STSSKDEEQD LSPVAQSAVE HVPKRRRERA HSKTPYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A3e-67772039135ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.122320.0leaf| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462568.11e-173ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021308896.11e-173ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021308897.11e-173ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-103EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLC5X3X31e-171C5X3X3_SORBI; Uncharacterized protein
STRINGSb02g028390.11e-172(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-105ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]