PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof002840

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

VOZ

Protein Properties

Length: 273aa MW: 30867.8 Da PI: 7.4169

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17434922	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-64256	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	400.9	2.7e-123	2	208	12	217
VOZ 12 alwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewl 110 alwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaatakspwna+elfdl ++ege+irewl Sof002840 2 ALWDCPRPAIGSERWHDYCSMYHADLAVQEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKNVGIPICEGAATAKSPWNAPELFDLYIFEGESIREWL 101 8*************************9879**************************************************************** PP VOZ 111 ffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqk 210 ffdkprraf+sgnrkqrslpdysgrgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyeine+da+alyrlelk++++kk ak+k+++++++++q+ Sof002840 102 FFDKPRRAFDSGNRKQRSLPDYSGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINECDAFALYRLELKSSHAKKIAKSKLACNPMNEIQQ 201 ************************************************************************************************ PP VOZ 211 klgrlta 217 +++rl+a Sof002840 202 QMVRLSA 208 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
XALWDCPRPA IGSERWHDYC SMYHADLAVQ EEGPPGTMPV IRPRGIDLKD GPLFAALSAK 60 IQGKNVGIPI CEGAATAKSP WNAPELFDLY IFEGESIREW LFFDKPRRAF DSGNRKQRSL 120 PDYSGRGWHE SRKQVMKDFG GLKRSYYMDP QPSNSYEWHL YEYEINECDA FALYRLELKS 180 SHAKKIAKSK LACNPMNEIQ QQMVRLSADS PVDTKRTARS XTXANPIDAN TNIYSGXNSA 240 VQANVQNAYQ PGSQVDQMTY LDGSVVIGLI CRW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.13685	0.0	leaf\| root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458501.2	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-106	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1B6Q642	0.0	A0A1B6Q642_SORBI; Uncharacterized protein
STRING	Sb03g034810.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-103	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]