PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002842
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 273aa    MW: 30961.4 Da    PI: 8.427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17335221PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-68638PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05162187123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C    C+++F ++ +L+ H r+ +
  Sof002842 162 FQCDidLCDMTFETRAELNAHKRNiC 187
                899999****************9877 PP
2zf-C2H215.35.7e-05187209323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                C+   Cgk+Fs++ +LkrH+ +H
  Sof002842 187 CTdeSCGKRFSSHKYLKRHQCVH 209
                77779***************998 PP
3zf-C2H211.10.0012215239123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                +kCp   C+++F+     + Hir+H
  Sof002842 215 FKCPweGCKMTFKWLWAQTEHIRVH 239
                89*********************99 PP
4zf-C2H2163.4e-05245271123
                EEET..TTTEEESSHHHHHHHHHH..T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                ykC+  dCg++F+  s++ rH ++  H
  Sof002842 245 YKCSapDCGQTFRYVSDYSRHRKKfnH 271
                99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035534162184IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.78E-7185222No hitNo description
SMARTSM003552.3185209IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.383185214IPR007087Zinc finger, C2H2
PROSITE patternPS000280187209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-7191215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.0E-11213267No hitNo description
PROSITE profilePS5015712.05215244IPR007087Zinc finger, C2H2
SMARTSM003557.8E-4215239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-11216239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280217239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-11240267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.12245271IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803245273IPR007087Zinc finger, C2H2
PROSITE patternPS000280247271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
XDTGSNTFDI LLGALAEESK ATDAPGKDEV GKASLTLMTL ASNEPSADDV TDVRAVEVVE  60
TDTTLGAAKD DKQVDLSDVV SRCIGSSNRT DIICYVRRKH KRKRDSQSNT DSSQSHSSFV  120
RSPCESLRPR TKPAVVEESE WSRTAEASAA KRGKRTKTVG SFQCDIDLCD MTFETRAELN  180
AHKRNICTDE SCGKRFSSHK YLKRHQCVHS EMRPFKCPWE GCKMTFKWLW AQTEHIRVHT  240
GERPYKCSAP DCGQTFRYVS DYSRHRKKFN HYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-5016027121132Lysine-specific demethylase REF6
6a58_A1e-5016027121132Lysine-specific demethylase REF6
6a59_A1e-5016027121132Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RRKHKRK
297104RKHKRKRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.138780.0crown| inflorescence| leaf| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468494.20.0lysine-specific demethylase SE14
SwissprotQ10RP41e-126SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A1B6QQG31e-180A0A1B6QQG3_SORBI; Uncharacterized protein
STRINGSb01g046870.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-51C2H2 family protein