PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002912
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 270aa    MW: 30172.5 Da    PI: 4.5956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17276025PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-93133734PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS162.24.4e-501022672168
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cAea+s+ +  +aq+++++l++ ++ +gdp qR+aay++e+Laa +++s++++y+al+++e++   +  +l+a+++++e++P++++++++aN a
  Sof002912 102 KQLLFDCAEAISECSIDEAQSIITELRQKVAIQGDPSQRIAAYLVEGLAAAIQSSGKGIYRALRCKEAP---TLYQLSAMQILFEICPCFRLGFMAANYA 198
                589*****************************************************************9...89999*********************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                Ilea +ge+ vHiiDfdi+qG Q+++L+q L + +++p  lRiTgv++pes+      l+  g+rL+k+
  Sof002912 199 ILEACKGEKVVHIIDFDINQGSQYITLIQFLRNHSNKPRLLRITGVDDPESVhkAGGGLKGGGQRLEKL 267
                **************************************************9976677889999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.43175270IPR005202Transcription factor GRAS
PfamPF035141.5E-47102267IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
XHQQNSQSLS DNQTSDLEVE FDEDEMRLKL QELEHALLDD GDEIFSDFSG SIIDEWNDSI  60
KKNNEWTHTM KDIVSMDSPK ESSPESSLCC LESNIGEARH PKQLLFDCAE AISECSIDEA  120
QSIITELRQK VAIQGDPSQR IAAYLVEGLA AAIQSSGKGI YRALRCKEAP TLYQLSAMQI  180
LFEICPCFRL GFMAANYAIL EACKGEKVVH IIDFDINQGS QYITLIQFLR NHSNKPRLLR  240
ITGVDDPESV HKAGGGLKGG GQRLEKLQRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2110825526176Protein SCARECROW
5b3h_A4e-2110825525175Protein SCARECROW
5b3h_D4e-2110825525175Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180010.0callus| crown| leaf| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439827.11e-174scarecrow-like protein 1
SwissprotQ9SDQ36e-80SCL1_ARATH; Scarecrow-like protein 1
TrEMBLC5YY781e-172C5YY78_SORBI; Uncharacterized protein
STRINGSb09g020850.11e-173(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.15e-73SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]