PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002914
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-YA
Protein Properties Length: 269aa    MW: 28119.7 Da    PI: 9.9901
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-33995PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA27.41.1e-08234258125
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakle 25 
                ++p+YVNaKQy++I++   +Rak+ 
  Sof002914 234 EAPIYVNAKQYDAIMRXPRARAKAR 258
                57*************9999998874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115212.359233269IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-6236259IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
XAAVLSGALA AVVLLVLFQP RPSPTALSLL LAWEPGIAKP TFTLGTVLSP TSLGNVASST  60
TSKMMSFRST HEGAGFGHAA AAASGAPLPW WAGPTAAPML CGEPLGLGRT VPALSPEDHC  120
RDGRFQVLQG PLDPPVPSLK APVAQQQPER GLPELLNLSV AHQGKGKKGS EHSATVALQS  180
PFAIYNGRFE LGLAQSMISA DNSYADQHYG LLSPYPMGAT PGGRMLIPLN MPTEAPIYVN  240
AKQYDAIMRX PRARAKARGK IGCSKPKSX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.113721e-143crown| leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443581.21e-113uncharacterized protein LOC8071483 isoform X2
RefseqXP_021301386.11e-114uncharacterized protein LOC8071483 isoform X4
TrEMBLA0A1Z5R7A81e-111A0A1Z5R7A8_SORBI; Uncharacterized protein
STRINGPavir.J24924.1.p3e-63(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-10nuclear factor Y, subunit A10