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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||||||
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| TF ID | Sof003084 | ||||||||||||
| Organism | |||||||||||||
| Taxonomic ID | |||||||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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| Family | MYB_related | ||||||||||||
| Protein Properties | Length: 261aa MW: 28697.6 Da PI: 4.1967 | ||||||||||||
| Description | MYB_related family protein | ||||||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 40.3 | 7.2e-13 | 48 | 89 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+WT eE +ll+++ + +Gg+ W+ Ia+++ ++t qc +++++
Sof003084 48 SWTDEETLLLLEGLEIFGGK-WAEIAEHVA-TKTKAQCMLHFLQ 89
7*******************.*********.**********987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57850 | 9.42E-6 | 2 | 25 | No hit | No description |
| PROSITE profile | PS51293 | 21.688 | 44 | 95 | IPR017884 | SANT domain |
| SMART | SM00717 | 8.5E-13 | 45 | 93 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 2.84E-13 | 45 | 99 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 47 | 89 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 4.3E-12 | 48 | 90 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 5.25E-4 | 66 | 90 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 261 aa Download sequence Send to blast |
RKRYHCRTQA DFDLCCDCYN EGKFDPGMAK TDFILMDSAE VSGASGTSWT DEETLLLLEG 60 LEIFGGKWAE IAEHVATKTK AQCMLHFLQM QIEDRFHDGE DINQNIPVST EQATTEKVIA 120 DTSEKMEVED KVEGRDTADE KASENTEGSC EETKTEDANV VVNKDTQNSG GTDSGASPST 180 GEPKQSSDEQ PIVKENPQIY VLLVKNINVA IDILKSAFDG AGHTPEYERS FADARNPIMA 240 LAAYLTGLVE NDNTTTSSRI H |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Sof.10389 | 0.0 | crown| inflorescence| leaf| meristem | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002466552.1 | 1e-147 | SWI/SNF complex subunit SWI3D isoform X2 | ||||
| Refseq | XP_021320574.1 | 1e-147 | SWI/SNF complex subunit SWI3D isoform X1 | ||||
| Refseq | XP_021320582.1 | 1e-149 | SWI/SNF complex subunit SWI3D isoform X3 | ||||
| TrEMBL | C5WMX1 | 1e-146 | C5WMX1_SORBI; Uncharacterized protein | ||||
| STRING | Sb01g009800.1 | 1e-146 | (Sorghum bicolor) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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