PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003094
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 260aa    MW: 27859.1 Da    PI: 9.3994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-180133734PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-21898PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-20112161255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Sof003094 112 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 161
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.88E-33111171No hitNo description
Gene3DG3DSA:3.30.730.101.4E-32112170IPR001471AP2/ERF domain
SMARTSM003803.4E-38112175IPR001471AP2/ERF domain
PROSITE profilePS5103223.117112169IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23112170IPR016177DNA-binding domain
PRINTSPR003673.8E-11113124IPR001471AP2/ERF domain
PfamPF008471.2E-13113161IPR001471AP2/ERF domain
PRINTSPR003673.8E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
XAHASAMSQD SYMPTPSYTS FSTSPLPTRA AATSSCSPFS QLPPLYSSPY AAPGMAGPMG  60
LNQLGPAQTQ QIQAQFMFQQ QQRGLHAAFL GPRAQPMKQS GSPPLAPAQS KLYRGVRQRH  120
WGKWVAEIRL PKNRTRLWLG TFDTAEDAAL AYDKAAFRLR GDMARLNFPA LRRDGAHLAG  180
PLHASVDAKL TAICQSLAGS KNGSSGDESA ASPPDSPKCS ASTEGEGEDD LSSTFLSPLP  240
HSVPPISPYS PFFFSSFFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23108169163ATERF1
3gcc_A5e-23108169163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.31070.0callus| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454259.11e-116ethylene-responsive transcription factor ERF060
SwissprotO656653e-53ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLC5XYP11e-115C5XYP1_SORBI; Uncharacterized protein
STRINGSb04g027660.11e-116(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-41ERF family protein