PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof003126

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Protein Properties

Length: 259aa MW: 28238 Da PI: 9.8584

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17377757	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-52115	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.2	6.4e-18	114	204	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f k+++ps+v + +l +p f+++h k +++ ++lede+g+ ++ +++++ l++GW++F+ +++k+gD++vF+l+++++f +v ++r+ Sof003126 114 FTKTMLPSHVIRGFWLGMPVAFCNKHLPK--QDTGIMLEDENGEDHHTTY--LGSRQG--LSGGWRGFAIKHDIKVGDVLVFQLVESTKF--KVYIIRT 204 89********************99433..5567***********..899888..9********************9986777..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-20	108	205	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.04E-23	109	205	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.08E-25	113	203	No hit	No description
Pfam	PF02362	4.9E-16	114	204	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.308	114	205	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-18	114	205	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
KRKRGWPPGS KSAKSRIGRP PGAQSSKSKM EQKMALVKQR VALLDSASNS SCSDSDKPAV 60 LHCGDTDDEG DDIPLKASDI NGQTLSASVH GNCGSAMARA KEVQAKLPEN NLSFTKTMLP 120 SHVIRGFWLG MPVAFCNKHL PKQDTGIMLE DENGEDHHTT YLGSRQGLSG GWRGFAIKHD 180 IKVGDVLVFQ LVESTKFKVY IIRTNEFTAT DGAITLLNLR RRKKGKLLSK ATRGEHSVPA 240 DDEHGNVIFN EAGGLKNFE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.8016	0.0	meristem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311371.1	1e-142	B3 domain-containing protein Os01g0234100 isoform X2
Swissprot	Q0JP99	1e-62	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A1B6Q0L5	1e-141	A0A1B6Q0L5_SORBI; Uncharacterized protein
TrEMBL	A0A1B6Q0M7	1e-142	A0A1B6Q0M7_SORBI; Uncharacterized protein
STRING	Sb03g000666.1	1e-90	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-37	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]