PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003139
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 258aa    MW: 28802.3 Da    PI: 10.6294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17381141PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-113978PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-1963113155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++ a+ +++g
  Sof003139  63 TQYRGIRRRP-WGKWAAEIRDPCK---GVRVWLGTYSTAEEAARAYDMAAWRIRG 113
                58********.**********854...3*********************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.87E-3263123No hitNo description
PROSITE profilePS5103224.89564121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3164122IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2264122IPR016177DNA-binding domain
PfamPF008474.9E-1264113IPR001471AP2/ERF domain
SMARTSM003806.6E-3464129IPR001471AP2/ERF domain
PRINTSPR003672.0E-116576IPR001471AP2/ERF domain
PRINTSPR003672.0E-1187103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTGVRRPLPL WFGLQSSWNR TLTRPGVILD IADGNKXEFQ TNSSNLVVGF NVHTAKVGSR  60
KRTQYRGIRR RPWGKWAAEI RDPCKGVRVW LGTYSTAEEA ARAYDMAAWR IRGKKAKVNF  120
PDAITHPEKR HRGRVTRPGK KITSQEVLKL DGTSVDHVIS AGSSTDDATV VKLELPESAS  180
LPPMSSAWLD AFELNQVNEL SYLEAERKRV AEEIVGVTNM VFGKGETRTA MNLDMMSLSR  240
TSAGSFTLKG THYEKSTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2261121263ATERF1
3gcc_A6e-2261121263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.140040.0callus| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463183.14e-97ethylene-responsive transcription factor ERF073
RefseqXP_021308253.14e-97ethylene-responsive transcription factor ERF073
TrEMBLC5XE219e-96C5XE21_SORBI; Uncharacterized protein
STRINGSb02g039300.11e-96(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.32e-24ERF family protein