PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003175
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family CPP
Protein Properties Length: 257aa    MW: 28448 Da    PI: 8.0463
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17308972PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-63398PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.14.1e-1466103340
        TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                +k+C Ckks+Clk+YC Cf+ g +Cs++C C+ C+Nke
  Sof003175  66 CKHCACKKSRCLKLYCPCFSGGGYCSDKCGCQPCFNKE 103
                89**********************************98 PP
2TCR50.93e-16151187339
        TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                ++gCnCkks+ClkkYC+C+++g+ Cs  C+C+dC+N 
  Sof003175 151 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 187
                589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.9E-1364105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.70665189IPR005172CRC domain
PfamPF036385.1E-1067103IPR005172CRC domain
SMARTSM011147.7E-15149190IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-11152186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEATPISVKP PSPAPAAPPP STLEPRDLPT HAVGGTELDP SSMNQLAIAP DPKRQRVEEA  60
ADGNGCKHCA CKKSRCLKLY CPCFSGGGYC SDKCGCQPCF NKEAFSETVQ TTRKVLLSRQ  120
KRMSMKINRR PEANAEPMED AHHSSSSTPP RRGCNCKKSS CLKKYCDCYQ DGTGCSLFCR  180
CDDCQNPFGK NEGIMADDSK RYLYTGADLD HSEGEHDFVV ERSPRLQSPI WKESSFHQTP  240
PHLXALKQKT HMWFPPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-136918614120Protein lin-54 homolog
5fd3_B5e-136918614120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61280.0crown| inflorescence| leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441351.11e-168protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLC5Z0T21e-167C5Z0T2_SORBI; Uncharacterized protein
STRINGSb09g025040.11e-167(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-42Tesmin/TSO1-like CXC domain-containing protein