PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003204
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 256aa    MW: 27745.1 Da    PI: 6.2984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-692133732PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-75637PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06119140426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                + C++f++ G Ck+Gd C  aHg
  Sof003204 119 AACPDFRK-GGCKRGDACELAHG 140
                78******.*********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4115141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.873116142IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4119140IPR000571Zinc finger, CCCH-type
SMARTSM0035627150173IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.751150174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMMMGEGAHA PPWQQSPAAA ISGGSMDADE AASPYALLSA LQHYLPSNEV AAAAYDEDDE  60
EAAALAAVDA YACDEFRMYE FKVRRCLRGR SHDWTDCPYA HPGEKARRRD PRRYHYSGAA  120
CPDFRKGGCK RGDACELAHG VFECWLHPSR YRTQPCKDGT GCRRRVCFFA HTPDQLRVLP  180
PPQQPSASPK GAAAAAAAFP LAESYERSPL PPAAFESYLT KSGLIMLAVP DQDASFGLQG  240
SPSAGFDPVY GPPNPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.99750.0bud| callus| crown| inflorescence| leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440755.11e-135zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-105C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLC5YUD41e-134C5YUD4_SORBI; Uncharacterized protein
STRINGSb09g006050.11e-135(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.19e-71C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]