PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof003282

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HB-other

Protein Properties

Length: 253aa MW: 28484 Da PI: 6.3147

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17312201	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-57506	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.3e-21	100	156	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Sof003282 100 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 156 688999************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-23	85	155	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.01E-20	85	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	97	157	IPR001356	Homeobox domain
SMART	SM00389	2.0E-19	98	161	IPR001356	Homeobox domain
CDD	cd00086	8.99E-19	100	158	No hit	No description
Pfam	PF00046	8.3E-19	100	155	IPR001356	Homeobox domain
PRINTS	PR00031	5.5E-5	128	137	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	132	155	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.5E-5	137	153	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MPPMIVRNSA AAYGSSSALS LGQPNLLDSQ QQLQLQQALQ QQHLLDQIPA TTAESGDNMG 60 RGGVRGSDPL GDEFESKSGS ENVDGVSVDD QDPNQRPSEK KRYHRHTQHQ IQEMEAFFKE 120 CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKNQHER QENSQLRAEN EKLRAENMRY 180 KEALSSASCP NCGGPAALGE MSFDEHHLRV ENARLREEID RISNIXXKYV GQPMVSFPVL 240 SSPLAGARPS PLX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.15942	0.0	crown\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008667765.1	1e-143	uncharacterized protein LOC100279217 isoform X3
Swissprot	Q0J9X2	1e-139	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A1E5WHW1	1e-150	A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2
STRING	GRMZM2G001289_P01	1e-142	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	1e-88	homeodomain GLABROUS 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]