 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof003343 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 250aa MW: 29170.1 Da PI: 9.4717 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17461606 | PU_unref | Unigene | View CDS |
| PUT-157a-Saccharum_officinarum-38924 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 258.1 | 3.2e-79 | 10 | 247 | 102 | 338 |
GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
I++ave++++vHi+D++i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef++ + +r+e++++e+L+++++
Sof003343 10 IMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRRGGPPRLRITGIDTPHPGfrPAERIEETGRYLKDYAQTFNVPFEFRA-IPSRFEAVQIEDLHIEKD 108
999***********************************************99*****************************.7***************** PP
GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
E l+Vn++++ ++l+desv es+r+ vL+++++++P+++++ + ++n++ F+ rf eal++ysa+fd+le+++pr++e++ +E +l+gre+ nv++
Sof003343 109 ELLIVNSMFKFKTLMDESVVAESPRNMVLNTIRKMNPHLFIHGIVNGSYNAPFFVSRFREALYHYSAIFDMLETNIPRDNEQKLLIESALFGREAANVIS 208
**************************************************************************************************** PP
GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
ceg er er et+++W+ r ++aGFk++p++++++k a+
Sof003343 209 CEGLERMERPETYKQWQVRNQRAGFKQLPINQDIMKRAS 247
***********************************9986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
XRSIVQGHPI MNAVEKAKKV HIVDYGIYYG FQWPCLIQRL STRRGGPPRL RITGIDTPHP 60
GFRPAERIEE TGRYLKDYAQ TFNVPFEFRA IPSRFEAVQI EDLHIEKDEL LIVNSMFKFK 120
TLMDESVVAE SPRNMVLNTI RKMNPHLFIH GIVNGSYNAP FFVSRFREAL YHYSAIFDML 180
ETNIPRDNEQ KLLIESALFG REAANVISCE GLERMERPET YKQWQVRNQR AGFKQLPINQ 240
DIMKRASEKX
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
