PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003411
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GeBP
Protein Properties Length: 247aa    MW: 26875.5 Da    PI: 4.8811
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17380917PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-123875PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.21e-32102201297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 
                lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q ife+++ iW+
  Sof003411 102 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAIFEIARTIWR 201
                79*************************8867778***************************************88899*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-30103200IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
XQAQAVELEP NPAETPNPSS RLEPIDPPIR SDLMFPTVDD PSAAGAMASS SFPDADAYGN  60
GDSDDLDFPV DPNPNPVFSS SPVAAPAAAP AAGSGAAERR PLFQRLWTDE DEIVILRAFA  120
EFTAQRGTSF ASHQYDTTPF YEDMRRRLNT GFTKNQLVEK IRRLKRKYRN CVERLRVAGA  180
GFTFRSPHEQ AIFEIARTIW RPASDKHGRD SDDKEEAAAA AATPTKPPLP WPPLGIDAAG  240
PNRGGSP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.169570.0callus| inflorescence| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142743.11e-108uncharacterized protein LOC100275086
TrEMBLA0A1E5VM571e-109A0A1E5VM57_9POAL; Uncharacterized protein
STRINGGRMZM2G026417_P011e-108(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.29e-33DNA-binding storekeeper protein-related transcriptional regulator