PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003412
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 247aa    MW: 27186.3 Da    PI: 8.5987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17368766PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-131054PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.4e-13118169155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR++iN+ ++ Lr+l+P+    ++++ +  + +  +++Y+++L+
  Sof003412 118 QRMTHIAVERNRRRKINEYLAVLRSLMPPY---YAQRGDQTSFVGGTINYVRELE 169
                79***************************9...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.00E-11116170No hitNo description
Gene3DG3DSA:4.10.280.106.5E-13116172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15116180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.945117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-5123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALLDAVVHP SQPQGHFGYG HWDCSYGPPF LSDATGGYGD SHVPYAGDWD PFLLASSLVH  60
DAQEWGQVVG SNKASPEREV MQSSAIEPPS SPVTTTTTTK RKRRRAKVVK NEEETESQRM  120
THIAVERNRR RKINEYLAVL RSLMPPYYAQ RGDQTSFVGG TINYVRELEN CSKSLEVAKD  180
LKEHSGNGQS CIPFGAFFNF PRYSSANSCL PPRVPATHII FGRGSSKFGG ELPVHGGLVT  240
TGLLNKX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104KRKRRR
2100104RKRRR
3118129RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.57950.0inflorescence| meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002489234.21e-107transcription factor bHLH96
TrEMBLA0A109NDP61e-106A0A109NDP6_SORBI; Uncharacterized protein
STRINGSb0012s004780.13e-86(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-34bHLH family protein