PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003422
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 247aa    MW: 26809.8 Da    PI: 10.3265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17280377PU_refUnigeneView CDS
PUT-157a-Saccharum_officinarum-126368PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84e-1693142255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ t e  a+a+++a +++ g
  Sof003422  93 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTXEAXARAYDRAXRRIXG 142
                69*******.**********75....44*********************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-2993156IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1793150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-2793151IPR001471AP2/ERF domain
CDDcd000181.15E-1693152No hitNo description
PROSITE profilePS5103221.99793150IPR001471AP2/ERF domain
PfamPF008471.0E-994142IPR001471AP2/ERF domain
PRINTSPR003679.1E-1094105IPR001471AP2/ERF domain
PRINTSPR003679.1E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
XTPADSPSFH STSILLLSSL KHSTKNLSPS KLLEESMCGG AIIFDYIPAR RRVSAADFWP  60
DSGADAEDSH ASHTPAPERA PLAKKAKRGR KNQYRGIRQR PWGKWAAEIR DPVKGVRVWL  120
GTYPTXEAXA RAYDRAXRRI XGAKAKVNXP NDTXPTVTVP TAAASGAAAA AQAPAVLPAP  180
KVEAQTQVSD EVKELSEQLM AYENYMNXLG IPYMEGGNAT ASATNGGRWR RPEKSQGACX  240
RRAWGLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1893150563ATERF1
3gcc_A2e-1893150563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61930.0callus| crown| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.19e-87uncharacterized protein LOC100193143
TrEMBLA0A3L6FDM47e-86A0A3L6FDM4_MAIZE; Ethylene-responsive transcription factor ERF071
STRINGGRMZM2G169382_P014e-86(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-25ERF family protein