PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003505
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 244aa    MW: 27482.8 Da    PI: 10.558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17448610PU_refUnigeneView CDS
PUT-157a-Saccharum_officinarum-121074PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-1762109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
        Sof003505  62 KGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 109
                      79******************************99************97 PP
2Myb_DNA-binding60.34.3e-19115159147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
        Sof003505 115 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 159
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-2453112IPR009057Homeodomain-like
PROSITE profilePS5129416.5857109IPR017930Myb domain
SuperFamilySSF466895.39E-3061156IPR009057Homeodomain-like
SMARTSM007171.9E-1361111IPR001005SANT/Myb domain
PfamPF002494.3E-1562109IPR001005SANT/Myb domain
CDDcd001672.22E-964109No hitNo description
PROSITE profilePS5129429.411110164IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-28113164IPR009057Homeodomain-like
SMARTSM007176.3E-18114162IPR001005SANT/Myb domain
PfamPF002492.9E-17115159IPR001005SANT/Myb domain
CDDcd001674.25E-12117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
XQQQQPPLPP ATQPTREARR GRKRRRQKDQ ESSQASIGGA VAARSTSIMG RSPCCEKAHT  60
NKGAWTKEED DRLVAYIKAH GEGCWRSLPK AAGLLRCGKS CRLRWINYLR PDLKRGNFTE  120
EEDELIIKLH SLLGNKWSLI AGRLPGRTDN EIKNYWNTHI RRKLLSKGID PVTHRPINEH  180
TSNITISFEA AAAAARDREE TKGAVFRLEE HNKAAAXSAA IIITPHPARE WGQGKPLKCP  240
DLNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-296116426128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61430.0inflorescence| leaf| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462743.11e-122myb-related protein Hv1
SwissprotP200261e-104MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A059Q2A71e-122A0A059Q2A7_9POAL; Myb domain protein 4
STRINGSb02g031190.11e-121(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-92myb domain protein 4