PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003531
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 243aa    MW: 25795.2 Da    PI: 6.8943
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17275452PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-861133731PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.22e-2446107159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYGqKe+++s++p++Y+rCt++   +C ++++v+r ++dp+v ++tY   H+++
  Sof003531  46 LDDGHAWRKYGQKEIQNSKHPKAYFRCTHKhdqQCLAQRQVQRRDDDPDVYTVTYIAVHTCR 107
                59***************************99999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2436109IPR003657WRKY domain
PROSITE profilePS5081120.23141109IPR003657WRKY domain
SuperFamilySSF1182908.63E-2442109IPR003657WRKY domain
SMARTSM007744.4E-3446108IPR003657WRKY domain
PfamPF031061.2E-2247107IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XDVTCAGSAA GGKRKGAAAG GGDKRAACRK RGQQGSSVVT KNTKDLDDGH AWRKYGQKEI  60
QNSKHPKAYF RCTHKHDQQC LAQRQVQRRD DDPDVYTVTY IAVHTCRDPA TAVAPLVVHA  120
TTDELHHAGS RLISFAANAS AATTSTTTTG NTTGQQAGHK DAAALLLARP LKLEGGGEQE  180
EVLSSLTPAP GPDQGDVTSG LQLQQQHCYG GDVADMAAHF GYDDTFWTTL CSDSITDILS  240
TDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-3336107169OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156050.0bud| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441930.12e-90probable WRKY transcription factor 70
TrEMBLC5YT654e-89C5YT65_SORBI; Uncharacterized protein
STRINGSb08g005080.16e-90(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-19WRKY DNA-binding protein 46