PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003612
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 240aa    MW: 25590.1 Da    PI: 10.1611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17280696PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-65714PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20152201255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a+++++g
  Sof003612 152 HYRGVRRRP-WGKWAAEIRDPT----KaARVWLGTFDTAEAAAAAYDDAALRFKG 201
                7********.**********95....35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31151210IPR001471AP2/ERF domain
SMARTSM003808.8E-35152215IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-22152210IPR016177DNA-binding domain
CDDcd000181.06E-16152209No hitNo description
PROSITE profilePS5103225.146152209IPR001471AP2/ERF domain
PfamPF008474.5E-13152201IPR001471AP2/ERF domain
PRINTSPR003671.7E-11153164IPR001471AP2/ERF domain
PRINTSPR003671.7E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAASDPYLSP TAARRRRLXK SSASQSPSSA PSSSQERHFQ QRQQQQIELG GGRRGGGHDD  60
HYYSPAAPAP ARYHEQAAQQ GVYSSSTMAY YDVGTRSSAA SSLQPGDMAA AAVPVATGSP  120
HQRVLLEAGA AGSSAAGQAV EVQEGTPTTM RHYRGVRRRP WGKWAAEIRD PTKAARVWLG  180
TFDTAEAAAA AYDDAALRFK GAKAKLNFPS AFQGELARAP FLFFWHPPAV GAAEQVPIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23151209463ATERF1
3gcc_A5e-23151209463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056GGRRGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.141170.0root| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647050.12e-73ethylene-responsive transcription factor ABI4 isoform X2
TrEMBLA0A3L6EUV11e-73A0A3L6EUV1_MAIZE; Ethylene-responsive transcription factor ERF113
STRINGGRMZM2G016434_P017e-73(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.15e-25related to AP2 6l