PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003663
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 238aa    MW: 25216.5 Da    PI: 4.5959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17309466PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-431133733PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-1851102155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++   grWv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  Sof003663  51 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 102
                68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1351102IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2052112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-3052112IPR001471AP2/ERF domain
SMARTSM003801.7E-2552116IPR001471AP2/ERF domain
PROSITE profilePS5103222.31352110IPR001471AP2/ERF domain
PRINTSPR003671.3E-55364IPR001471AP2/ERF domain
PRINTSPR003671.3E-57692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEYAVADDCG YGYDDQQDPP SSGDGDEYAT VLSAPPKRPA GRTKFRETRH PVYRGVRRRG  60
PAGRWVCEVR EPNKKSRIWL GTFATAEAAA RAHDVAALAL RGRAACLNFA DSARLLRVDP  120
ATLATPDDIR RAAIQLAEDS SASSSQQDAA AVAVAVASTT PAPSSAPSAA YQQQADAAAA  180
AAMYGASWEF DHSYYYDDGM VGGNAWQSNS GCHSNMDGDD DGDGAAGCAG DMTLWSYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14501091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.112770.0crown| leaf| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436386.15e-81dehydration-responsive element-binding protein 1C
TrEMBLQ3T5N11e-79Q3T5N1_SORBI; SbCBF5
STRINGSb10g001620.12e-80(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.14e-32dehydration response element B1A