PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003674
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 238aa    MW: 26305.8 Da    PI: 10.6263
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17358956PU_refUnigeneView CDS
PUT-157a-Saccharum_officinarum-24234PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-3384138155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl
  Sof003674  84 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 138
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.73881141IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-3181139IPR009057Homeodomain-like
SuperFamilySSF466891.76E-1684140IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2484139IPR006447Myb domain, plants
PfamPF002491.4E-886137IPR001005SANT/Myb domain
PfamPF143792.7E-20179224IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
XSKKGEGESR GTFPRIGSFA FGGRRRPLSL SSRRPCGGRQ RQPQEEDMFP PGLIHHRPDA  60
PAPGDGAPRS GPGGPSLVLT ADPKPRLRWT ADLHERFVDA VAQLGGPEKA TPKTILRTMG  120
VKGLTLFHLK SHLQKYRLGK QSGKEGSEQS KDASYLLDAQ SGMSVSPRVP AQEMKESQEV  180
KEALRAQMEV QRRLHEQVEV QKRVQIRMEA LQKYFDSILA SACKIVTEQF ASSGFSIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1984140258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.58110.0inflorescence| meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149061.11e-130myb family transcription factor-related protein
SwissprotQ94A572e-71PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A368Q0001e-134A0A368Q000_SETIT; Uncharacterized protein
STRINGSi030441m1e-134(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-72G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]