PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003701
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 237aa    MW: 24585.9 Da    PI: 7.508
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17371117PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-7647PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23.1e-2927128197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv+Gavg++ ++++q +q ++e++
  Sof003701  27 SCNGCRVLRKGCSDACVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGAGSWQPCQQAVETV 126
                6*********************9999888999****************************************************************9988 PP

     DUF260  96 ll 97 
                l+
  Sof003701 127 LR 128
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.426132IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-2427125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAELQGXALG CMRGGPPGGE WVVPGMSCNG CRVLRKGCSD ACVLRPCLQW IDGAEAQGHA  60
TVFVAKFFGR AGLMSFLTAV PEPQRPAVFQ SLLYEAAGRT INPVSGAVGL LGAGSWQPCQ  120
QAVETVLRGG AIGPLPEFDV GRDTFALAAR RAVGCSTFST AKRAPTTTRT NVGTPPVPPP  180
EPSCELGLWL SPGSPPAPGE RRRPGTPSMT SEESVTTATT IGCCGGGREP ELLDLFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.173420.0inflorescence| meristem| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460949.11e-123LOB domain-containing protein 37
SwissprotQ9FN115e-65LBD37_ARATH; LOB domain-containing protein 37
TrEMBLC5XD461e-121C5XD46_SORBI; Uncharacterized protein
STRINGSb02g038030.11e-122(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-62LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]