PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003734
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family AP2
Protein Properties Length: 235aa    MW: 25443.2 Da    PI: 9.5025
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17380482PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-106162PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-15132191155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+ ++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  Sof003734 132 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 191
                57*******************666664478446*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.46E-20132201No hitNo description
PfamPF008479.7E-12132191IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-17132201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-15133201IPR001471AP2/ERF domain
PROSITE profilePS5103218.742133199IPR001471AP2/ERF domain
SMARTSM003803.8E-28133205IPR001471AP2/ERF domain
PRINTSPR003671.5E-5134145IPR001471AP2/ERF domain
PRINTSPR003671.5E-5181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
GSTSTNNWLG FASFSGAADA VLHPLPPQGE ADAEAPMLED FLGLQEPTAP VAARPFAGSG  60
ASSIGLSMIK NWLRSQPAPA PAGVDSMALA TTATSPERSR KVVDGGESGG IILVDTAQQR  120
KASVDTFGQP TSIYRGVTKH RWTGRYEAHL WDNSCRREGQ TRKGRQVYLG GYDKEEKAAK  180
AYDLAALKYW GTTTTTNFPM SNYXKELEEM KHMSRQEYVA SLRRKSSGFS RGASI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.79200.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979180.11e-123AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-73BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A368S6J61e-121A0A368S6J6_SETIT; Uncharacterized protein
STRINGSi028170m1e-121(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.13e-59AP2 family protein