PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof003750

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 235aa MW: 25082.6 Da PI: 6.257

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17250943	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-584133730	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.7	9.6e-12	56	108	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 W t E++ll++av+++G+ +W+++a +++ +g+t+ +c++r++ ++ Sof003750 56 WGTLEELLLACAVTRHGTASWDSVAMEVQtrspvaarLGLTPHSCRLRFRHLR 108 9999*********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0014	52	110	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.2E-5	53	110	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-4	55	107	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-9	56	107	IPR001005	SANT/Myb domain
CDD	cd00167	2.74E-4	56	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
XNGGKGNGQG GAESLRPHLH CLTGENAGRM ADGSDGTDVS PESEATAAAV KGGEIWGTLE 60 ELLLACAVTR HGTASWDSVA MEVQTRSPVA ARLGLTPHSC RLRFRHLRRR FSTVGSGGEE 120 AEAEAEVDPD ASAAEGWVDE LRRLRVAELR RDVERCDLSI GSLQSKVKRL KEEGSRNVSG 180 EAKPDEGSRN DRVSSLSEEP RAVCQGVELH GSDVPQAPWP PGRGRGCPRV RGLLT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18470	0.0	bud\| inflorescence\| leaf\| meristem\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462574.2	1e-100	uncharacterized protein LOC8055879
TrEMBL	C5X3Y2	5e-81	C5X3Y2_SORBI; Uncharacterized protein
STRING	Sb02g028460.1	8e-82	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	5e-12	DNA-binding bromodomain-containing protein