PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003770
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRF
Protein Properties Length: 234aa    MW: 26056.8 Da    PI: 10.637
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17368796PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-127545PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC64.51.5e-20146183138
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 
                d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+ 
  Sof003770 146 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRKRQX 183
                79*********************************975 PP
2QLQ58.42.1e-2088123237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  Sof003770  88 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 123
                9******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-1187123IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-1488121IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.76288123IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166721.803146194IPR014977WRC domain
PfamPF088791.1E-17147185IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MELGVGDVMG LQQGIAITAP SPRGSGDLGL LKRAALTQAA AGPYPSPFLD EQKMLRFSKA  60
AHTLPSGLGL DFGGPSEQAF LLSRTKRPFT PSQWMELEHQ ALIYKYLNAK APIPSSLLIS  120
ISKSFRSSNR VSWRPLYQGY TNADSDPEPG RCRRTDGKKW RCSKEAMADH KYCERHINRK  180
RQXFKKACGK TTQKRPPRRC LLLLTHCHVL GHKGSLEKAK VNDSKPSTGH LVDR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.86820.0inflorescence| leaf| meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106044.11e-113putative growth-regulating factor 13
SwissprotQ9FRG83e-93GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLC4J2M41e-112C4J2M4_MAIZE; Growth-regulating factor 2
STRINGGRMZM2G018414_P011e-113(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-31growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]