PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003804
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HB-other
Protein Properties Length: 233aa    MW: 25858.8 Da    PI: 9.112
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17406869PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-43604PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox201.1e-06464154
               TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS
   Homeobox  1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54
               rrkRt +++eq++eLe++   ++ + +++   +  ++kl     ++t +q k+W  Nr+ak
  Sof003804  4 RRKRTLMNNEQIDELEKALVDEPEMHKNAvlLQSWSEKLslqgpEITASQLKNWLNNRKAK 64
               89*****************998887776622689999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.544168IPR001356Homeobox domain
SuperFamilySSF466893.64E-6270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-5375IPR009057Homeodomain-like
SMARTSM003895.3E-5372IPR001356Homeobox domain
CDDcd000863.72E-5467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
QPKRRKRTLM NNEQIDELEK ALVDEPEMHK NAVLLQSWSE KLSLQGPEIT ASQLKNWLNN  60
RKAKLARIAK ERGPFEGENA DKPSTPATIH LGESSESAGE DNYLPPARVM NALSKGRLVS  120
LDNNEQTSQA ELSPNTMLIR PFTRSFSLEP GRLVSLVDSN GKEVGRGKVF QTPGKSPAES  180
RICMVDVTEL KTEKWRELPH PSEASGKTFH EAXAXNGGIM RVSWDVVRLS PAG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.72410.0inflorescence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317157.11e-152nodulin homeobox isoform X1
TrEMBLA0A1B6PTM81e-151A0A1B6PTM8_SORBI; Uncharacterized protein
STRINGSb05g025680.11e-154(Sorghum bicolor)