PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003857
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family Whirly
Protein Properties Length: 231aa    MW: 25458 Da    PI: 10.2449
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-30077PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-30078PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1821.1e-56551922139
     Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101
                v+k+kaal++++++p+f++l+sg  +++r+G+ +l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+sneG v+k+l++ P+  
  Sof003857  55 VFKGKAALSIHPILPSFSKLESGGSRVSRNGSRMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGMVKKSLSITPIGS 154
                9*************************************************************************************************** PP

     Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 sG+fvn++v ns+ k+n+++svP++kaef+v+r++l+
  Sof003857 155 DSGYFVNITVVNSVEKTNDRLSVPITKAEFSVMRTALS 192
                ***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.3E-7143210IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.04E-7046231IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.7E-5655189IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLRLSRFLPS ASRRGFDLKE SLWSGSLTFQ QAVSTSAANL DAENLSGKRY ASYTVFKGKA  60
ALSIHPILPS FSKLESGGSR VSRNGSRMLT FFPAVGQRKY DYTKKQLFAL SPTEVGSLIS  120
LGPAESCEFF HDPSMKSSNE GMVKKSLSIT PIGSDSGYFV NITVVNSVEK TNDRLSVPIT  180
KAEFSVMRTA LSFALPHIMG WDQALTNHHP SPPAISKPRV ERPHPDSEWE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-75412083169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-75412083169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-75412083169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-75412083169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.139840.0bud| callus| inflorescence| leaf| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453336.11e-158single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0341e-75WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLC5XVD21e-157C5XVD2_SORBI; Uncharacterized protein
STRINGSb04g004060.11e-158(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-71WHIRLY 2