PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003940
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 228aa    MW: 24498.6 Da    PI: 10.2959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17344390PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-41484PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.1e-14146192455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Sof003940 146 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 192
                799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-9649IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-17145197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-15145196No hitNo description
PfamPF000102.5E-11146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-16148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
XPGWYVRASL AQSAGLRTVV FLPCKGGVLE LGSVVPVRET PETVRAIQTA LAVTPPAREE  60
CMRIFGKDLS PSGRTPRSGD NWAPQLGAQA TASKEAAAAR PKAPEPPRSI DFTKPGKPEQ  120
QAGGGEERRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP KISKMDKASL  180
LSDAIAYIQE LEDRLHRGGG GGSACSAARA ESPAVEGKAM QDEVGACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27140195257Transcription factor MYC2
5gnj_B1e-27140195257Transcription factor MYC2
5gnj_E1e-27140195257Transcription factor MYC2
5gnj_F1e-27140195257Transcription factor MYC2
5gnj_G1e-27140195257Transcription factor MYC2
5gnj_I1e-27140195257Transcription factor MYC2
5gnj_M1e-27140195257Transcription factor MYC2
5gnj_N1e-27140195257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.131760.0bud| crown| inflorescence| meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456225.11e-118transcription factor bHLH13
SwissprotA0A3Q7H2168e-47MTB3_SOLLC; Transcription factor MTB3
TrEMBLC5XHM51e-117C5XHM5_SORBI; Uncharacterized protein
STRINGSb03g032420.11e-117(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.18e-32bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]