PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003978
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GATA
Protein Properties Length: 227aa    MW: 24364.9 Da    PI: 10.0519
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17381002PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-77749PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17143179135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cgt    Tp++Rrgpdg++tLCnaCGl+++ kgl
  Sof003978 143 CHHCGTNAtaTPMMRRGPDGPRTLCNACGLMWANKGL 179
                ******9989***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.6E-12742IPR010399Tify domain
PROSITE profilePS5132015.373742IPR010399Tify domain
PfamPF062002.9E-131041IPR010399Tify domain
PfamPF062035.8E-1666108IPR010402CCT domain
PROSITE profilePS5101713.33466108IPR010402CCT domain
SMARTSM004016.3E-13137195IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.671137196IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-12141189No hitNo description
CDDcd002027.95E-16142185No hitNo description
Gene3DG3DSA:3.30.50.102.7E-16142184IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440143170IPR000679Zinc finger, GATA-type
PfamPF003201.5E-15143179IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVPGTVPPMA TNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELSSLGG ASSSAPYSKR  60
LNFPHRVASL MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKP KPDEIAAASE  120
MAAVDGSPNW ALVEGRPPSA AECHHCGTNA TATPMMRRGP DGPRTLCNAC GLMWANKGLL  180
RDLSKSPVPL QVMQSAPLLD AGNGSAMSAP GSELENAAAA MANGHES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.23480.0callus| crown| inflorescence| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304768.11e-152GATA transcription factor 20-like isoform X2
SwissprotQ5Z4U51e-124GAT20_ORYSJ; GATA transcription factor 20
TrEMBLC5Z8W21e-149C5Z8W2_SORBI; Uncharacterized protein
STRINGSb10g028750.11e-150(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-67ZIM-like 1