PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003988
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family YABBY
Protein Properties Length: 226aa    MW: 25639.5 Da    PI: 8.489
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17433584PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-100407PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY233.83.9e-7251642170
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                ++   +e+vCyv+CnfCntilavsvPs s++++vtvrCGhCtsllsvnl+   q l++++h         +e+ kv++ ++++n+ ++  +s++ ++ ++
  Sof003988   5 QIAPVPEHVCYVHCNFCNTILAVSVPSHSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNH-------YSQENFKVQNISFTENYPEYAPSSSKYRMPTM 97 
                567789******************************************************9.......568999*************9999999888776 PP

      YABBY 102 ..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   + + +++ +    +r PekrqrvPsaynrfikeei+rikasnPdish+eafs+aaknWahfP+ihfgl
  Sof003988  98 lsAKGDPDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPDISHKEAFSTAAKNWAHFPNIHFGL 164
                433333444554....89***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.0E-7110164IPR006780YABBY protein
SuperFamilySSF470954.71E-8109158IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-5110158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSAQQIAPVP EHVCYVHCNF CNTILAVSVP SHSMLNIVTV RCGHCTSLLS VNLRGLIQSL  60
PVQNHYSQEN FKVQNISFTE NYPEYAPSSS KYRMPTMLSA KGDPDHMLHV RAPEKRQRVP  120
SAYNRFIKEE IRRIKASNPD ISHKEAFSTA AKNWAHFPNI HFGLGPYESS NKLDEGHRCN  180
GPSPESXRSP LRPISTXALC XXYCKXXETR CILXHELVCE CGHIYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.145450.0inflorescence| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666788.21e-115protein YABBY 2
SwissprotQ10FZ71e-96YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A059PZZ71e-125A0A059PZZ7_9POAL; Axial regulator
STRINGGRMZM2G074124_P041e-109(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-59YABBY family protein