PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004031
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 225aa    MW: 24340.2 Da    PI: 8.307
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17313918PU_refUnigeneView CDS
PUT-157a-Saccharum_officinarum-112388PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.7e-117096127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +++rtG C++G +C+F+H+p
  Sof004031 70 PGEPDCTYYLRTGLCRFGMSCRFNHPP 96
               5789*********************97 PP
2zf-CCCH39.21.1e-12117141327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+++++tGtCk+G++CkF+H++
  Sof004031 117 QPECQYYLKTGTCKFGPTCKFHHPR 141
                799********************96 PP
3zf-CCCH33.57e-11163187327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++++tG+Cky ++CkF+H++
  Sof004031 163 EKECGYYLKTGQCKYANTCKFHHPE 187
                679********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-56996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9716997IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-87196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-57497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-47595IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694114142IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6114141IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10117141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5120142IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206160188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6160187IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-8163187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4166186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDDAGRAPPP APAAVTVSAT AAPAPPPPSA TAAADKSSTD PDALYEEGMW QQMAMNSGAA  60
MQPGSYPERP GEPDCTYYLR TGLCRFGMSC RFNHPPDRNL AIASARMKGE YPERVGQPEC  120
QYYLKTGTCK FGPTCKFHHP REKAGIAGRV QLNTLGYPLR PSEKECGYYL KTGQCKYANT  180
CKFHHPELFN VVPSSRGSPX YTSVHSSASA GPQSYTGTMP SWAFP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.24920.0callus| crown| inflorescence| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.11e-145zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB51e-122C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLK3XI361e-143K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m1e-144(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-76zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]