PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004071
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25184.1 Da    PI: 7.5966
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17411691PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-41455PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.49e-242776150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs++gkly y 
  Sof004071 27 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSTSGKLYHYL 76
               79*********************************************996 PP
2K-box20.42.2e-0890187198
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                y++++++++++   ++ + el+k ++  e +++e+R    +d e+ ++  L+ Le++Le ++ k+   K++ +  +i++l +  +  +ee   L  kl
  Sof004071  90 YEAATHTKVWTDIRQERRAELEKAEQMCELMEKELRFTTVDDGEQYTVPSLELLEHNLEAAVHKVGFEKERKIGGEINYLENIIRGRHEERYGLCDKL 187
                566778889**********************************************************************9999988888888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.5811979IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-321978IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-2820109IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-232141IPR002100Transcription factor, MADS-box
PfamPF003199.9E-232875IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-234156IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-235677IPR002100Transcription factor, MADS-box
PfamPF014864.0E-9102187IPR002487Transcription factor, K-box
PROSITE profilePS512978.854103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
XRNSAVAAAR GGGGSDDEMG RGRSEIKRIE NPTQRQSTFY KRRDGLFKKA RELSVLCDVD  60
LLLLLFSTSG KLYHYLSPTV PSVKDLVERY EAATHTKVWT DIRQERRAEL EKAEQMCELM  120
EKELRFTTVD DGEQYTVPSL ELLEHNLEAA VHKVGFEKER KIGGEINYLE NIIRGRHEER  180
YGLCDKLAHS QASNNDGERG SAPPSSGLEL KRGSTRAAWK LVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-1419102184MEF2 CHIMERA
6byy_B3e-1419102184MEF2 CHIMERA
6byy_C3e-1419102184MEF2 CHIMERA
6byy_D3e-1419102184MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.202400.0inflorescence
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311533.11e-122MADS-box transcription factor 32 isoform X1
SwissprotQ8S1511e-106MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A1B6Q5V71e-120A0A1B6Q5V7_SORBI; Uncharacterized protein
STRINGGRMZM2G001139_P011e-118(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.25e-17MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]