PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004083
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 223aa    MW: 25388.1 Da    PI: 5.0559
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-98527PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-071371702154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sof004083 137 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 170
                569*****************************87 PP
2ELK28.73e-1091112122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++L+++Y+++L+++++E++
  Sof004083  91 ELKNELKQGYKEKLVDIREEIM 112
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037918.0E-8134IPR005541KNOX2
SMARTSM012564.2E-7135IPR005541KNOX2
PfamPF037894.5E-791112IPR005539ELK domain
SMARTSM011886.3E-491112IPR005539ELK domain
PROSITE profilePS5121310.05791111IPR005539ELK domain
PROSITE profilePS5007111.531111174IPR001356Homeobox domain
SMARTSM003893.5E-10113178IPR001356Homeobox domain
SuperFamilySSF466896.42E-16113177IPR009057Homeodomain-like
CDDcd000863.14E-11114175No hitNo description
Gene3DG3DSA:1.10.10.608.7E-25118175IPR009057Homeodomain-like
PfamPF059204.4E-18131170IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
LCSFKEQLQQ HVRVHAMEAV MGCWELEQSL QSLTGASPGE GTGATMSDDE DNQVDSEANM  60
FDGNDGSDGM GFGPLILTEG ERSLVERVRQ ELKNELKQGY KEKLVDIREE IMRKRRAGKL  120
PGDTASVLKA WWEAHSKWPY PTEDDKARLV QETGLQLKQI NNWFINQRKR NWHSNPTSSG  180
EKTXEEKVMM AQSNVDEARY VHYTLWGSTF SLTVSKKEDM QLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13114178872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.189005e-90inflorescence| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315703.11e-134homeobox protein knotted-1-like 2
SwissprotQ0E3C31e-132KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A1Z5RLP91e-132A0A1Z5RLP9_SORBI; Uncharacterized protein
TrEMBLC4IYL21e-133C4IYL2_MAIZE; Uncharacterized protein
STRINGGRMZM2G370332_P021e-132(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-115KNOTTED1-like homeobox gene 3