PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004111
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 222aa    MW: 23628.2 Da    PI: 5.2857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17286525PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-46714PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14138177244
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                +y+GVr+++ +g+++AeIrdp +ng  +r++lg ++tae+Aa 
  Sof004111 138 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGXYDTAEDAAV 177
                8********.***********9987..**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-26137196IPR001471AP2/ERF domain
CDDcd000182.77E-25137196No hitNo description
SuperFamilySSF541714.51E-20138197IPR016177DNA-binding domain
PfamPF008472.4E-8138176IPR001471AP2/ERF domain
PROSITE profilePS5103221.865138196IPR001471AP2/ERF domain
SMARTSM003801.5E-30138202IPR001471AP2/ERF domain
PRINTSPR003672.2E-9139150IPR001471AP2/ERF domain
PRINTSPR003672.2E-9162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLLNPASEAL VLDTIRQHLL EEPAPAAEAR PADESFGSLV ADQWSGSLPF RTDDADDMVV  60
FGALQDAFAY GWLPDGSFAH VKPEPVRSPD SSHSYDGSCC FGGLLDPASP LTPSSEGGEV  120
AATPRREEAA AAVARGKHYR GVRQRPWGKF AAEIRDPAKN GARVWLGXYD TAEDAAVCYN  180
PAAYRIGGLR APLNFPFQLG SKIAVVGGFH VLGYLHSGGQ GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-31134201168ATERF1
3gcc_A6e-31134201168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.154690.0leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142230.17e-96uncharacterized protein LOC100274398
TrEMBLA0A0A9S4Y93e-96A0A0A9S4Y9_ARUDO; Uncharacterized protein
STRINGGRMZM2G080516_P013e-95(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-38ethylene responsive element binding factor 1