PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof004120

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

TCP

Protein Properties

Length: 222aa MW: 23938.4 Da PI: 11.4461

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17448212	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-72544	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.5	5.9e-39	63	140	2	79
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ +++ s Sof004120 63 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPS 140 789******************************************************************766222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-31	68	145	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.039	69	123	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
XTATSTAQQL DPKDYQQQQP AQHHLQIQIH QPPQQDGGGG GKEQQQQLQV VAQPGERRQQ 60 PLAPKRSSNK DRHTKVDGRG RRIRMPALCA ARIFQLTREL GHKSDGETVQ WLLQQAEPAI 120 VAATGTGTIP ASALASVAPS LPSPTSGLAR PHHHHHPHHM WAPSAASAGF YSPSFLKFAA 180 ASTGDAAGIG GIMQRMGIPG ASSCRRGRRW GTLRSGGHIW FX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.17579	0.0	inflorescence\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456872.1	2e-83	transcription factor TCP20
TrEMBL	C5XGD6	5e-82	C5XGD6_SORBI; Uncharacterized protein
STRING	Sb03g044320.1	9e-83	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	8e-41	TCP family protein