PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004162
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HSF
Protein Properties Length: 220aa    MW: 23618.4 Da    PI: 10.207
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17242849PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-118614PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.42.9e-30111062103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT...TEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY...gFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                   F+ k+y ++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+Y   gF+kv+ ++         weF+h sF +g+++ll+
     Sof004162  11 FVWKTYMMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYvxlGFRKVDPDR---------WEFAHASFLRGQTHLLR 98 
                   9**********************************************************9999****9999.........***************** PP

                   XXXXXXXX CS
  HSF_DNA-bind  96 kikrkkse 103
                   +i r+ s+
     Sof004162  99 NIVRRGSS 106
                   ****9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.7E-477103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-318103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.3E-358103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-2611103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-121134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-124961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-126274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAAGAGAAAP FVWKTYMMVE DPGTDGVIGW GKGNNSFVVA DPFVFSQTLL PAHFKHNNFS  60
SFVRQLNTYV XLGFRKVDPD RWEFAHASFL RGQTHLLRNI VRRGSSSGAG AGVGGGGKRK  120
DAAASGGPAE ASASGDDMAM VATEVVCLKQ EQRAIDDRVA SMWRRVQETE RRPKQMLAFL  180
LKVVGDRDRL HRLVGDAAAP DNGFTFGAXG XEPAGGXRXG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24110314129Heat shock factor protein 1
5d5v_B7e-24110314129Heat shock factor protein 1
5d5v_D7e-24110314129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.224910.0bud| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.11e-113heat stress transcription factor C-2b
SwissprotQ0DBL61e-101HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A368QVH61e-112A0A368QVH6_SETIT; Uncharacterized protein
STRINGSb10g021800.11e-106(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-53heat shock transcription factor C1