PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004191
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 219aa    MW: 25207.2 Da    PI: 9.9944
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17421758PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-235133733PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-111357648
                     HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     +eEd  l  +v+q+G++ W++++++m+  + R +k+c +rw +yl
        Sof004191 13 AEEDAVLRAYVRQYGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 57
                     69*****************************************97 PP
2Myb_DNA-binding36.31.3e-1163107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ ++eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
        Sof004191  63 KGSLSEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 107
                      57789*****************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.952157IPR017930Myb domain
SMARTSM007171.4E-7759IPR001005SANT/Myb domain
CDDcd001675.12E-61357No hitNo description
SuperFamilySSF466898.99E-2013102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-171364IPR009057Homeodomain-like
PfamPF139211.3E-121372No hitNo description
PROSITE profilePS5129422.93358112IPR017930Myb domain
SMARTSM007175.3E-1062110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1565106IPR009057Homeodomain-like
CDDcd001677.53E-767108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MACADEGATA LAAEEDAVLR AYVRQYGPRE WHLVSQRMNV ALDRDAKSCL ERWKNYLRPG  60
IKKGSLSEEE QRLVIRLQAK HGNKWKKIAA EVPGRTAKRL GKWWEVFKEK QQRELRDSRR  120
PPPEPSPXPP SPSVTLSLAS ATVEEFEAKM RTMRLEQAAA AERVERDHRE KVAELRRDAQ  180
LXEEKMAEQW AAKHARVAKF LDQMGYSSRL WSSATDMNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-1414961089C-Myb DNA-Binding Domain
1msf_C2e-1414961089C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.81970.0inflorescence| leaf| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664658.12e-90PREDICTED: protein rough sheath 2 homolog
SwissprotQ9S7B21e-67RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A151SW094e-75A0A151SW09_CAJCA; Transcription factor AS1
TrEMBLM0T2N16e-74M0T2N1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P29070_0011e-74(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.14e-64MYB family protein