PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004211
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 219aa    MW: 22937.8 Da    PI: 8.8824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17416771PU_refUnigeneView CDS
PUT-157a-Saccharum_officinarum-18581PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00062153179430
                HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
        HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                +h+  Er RR+ri + ++ L +l+P +
  Sof004211 153 SHSLPERVRRERIIELMQFLHDLVPGC 179
                79999********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-10147213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.846149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-9149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
XSLCQGLLDL DDDKFSAMCS AFGYLQEWPD LGAMCGANLG VPAVAAAAPS ARDGNDSSSC  60
SGSGGGGGGC RKRRPDAYLD AKGGANDMSK RPRGKQLSGL SEIAAPGKGK QERPKAGTKK  120
KAEAAAAAAA AAAAGHKTDY IHVRARRGQA TDSHSLPERV RRERIIELMQ FLHDLVPGCI  180
KVTGKACMLY EIINSVQSLL KQVEFLSMNN VAFNPGGEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.146770.0leaf| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452680.13e-97transcription factor bHLH76
TrEMBLA0A3L6ELD89e-98A0A3L6ELD8_MAIZE; Transcription factor bHLH63
STRINGSb04g030530.11e-96(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-34cryptochrome-interacting basic-helix-loop-helix 1