PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004234
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 218aa    MW: 24956.4 Da    PI: 7.0465
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-82204PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.4e-18221511128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                lp+G++F+P+d++++  +L+++v +        +  +e+ik vd     y  +P+d+p  v+++ +  yfF+++ + y++++ +n       Wk+  + +
  Sof004234  22 LPRGVEFNPSDSDIL-WHLAAEVGNGLierhpfI--HEFIKFVDgdggFYCRHPQDIP-GVSQDGRASYFFHRSFEPYNNENDANN-----CWKKIESPR 112
                799***********9.789999998884444331..2234444455559999******.667788999**********98766666.....5******** PP

        NAM  91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +++  +g+l g+k+++++y    ++++++ t+W +h y+l
  Sof004234 113 SIIL-DGTLQGCKEVFALYadMPSDKRSQXTNWRLHRYHL 151
                ****.999***********5434788889**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-2414168IPR003441NAC domain
PROSITE profilePS5100520.94722169IPR003441NAC domain
PfamPF023651.5E-823151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSFAGSTPDP TVLMHCESWP GLPRGVEFNP SDSDILWHLA AEVGNGLIER HPFIHEFIKF  60
VDGDGGFYCR HPQDIPGVSQ DGRASYFFHR SFEPYNNEND ANNCWKKIES PRSIILDGTL  120
QGCKEVFALY ADMPSDKRSQ XTNWRLHRYH LQNTVKAESE IVVSXIFLAS RSNLCDLAEE  180
ARIGFRRYVS THKRFKRGMC RRVLPLKSVP GTDELDHX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.198080.0callus| inflorescence| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465629.11e-123uncharacterized protein LOC8085287
TrEMBLA0A1Z5SAN11e-122A0A1Z5SAN1_SORBI; Uncharacterized protein
TrEMBLA0A1Z5SAN31e-121A0A1Z5SAN3_SORBI; Uncharacterized protein
STRINGSb01g042570.11e-122(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.17e-36NAC family protein