PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004239
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 217aa    MW: 23306.3 Da    PI: 9.9248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17275419PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-101313PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-192267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + 
        Sof004239 22 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 67
                     79******************************.***********985 PP
2Myb_DNA-binding54.62.6e-1776118347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
        Sof004239  76 PFTPEEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 118
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5971772IPR017930Myb domain
SuperFamilySSF466891.39E-3219115IPR009057Homeodomain-like
SMARTSM007178.3E-172170IPR001005SANT/Myb domain
PfamPF002491.1E-182267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-262375IPR009057Homeodomain-like
CDDcd001671.53E-162466No hitNo description
SMARTSM007171.7E-1473121IPR001005SANT/Myb domain
PROSITE profilePS5129420.33874123IPR017930Myb domain
CDDcd001673.33E-1276119No hitNo description
PfamPF002498.5E-1576118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2476122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MASPSPSCRG GGGKAADVDR IKGPWSPEED EALQRLVARH GARNWSLISR SIPGRSGKSC  60
RLRWCNQLSP QVEHRPFTPE EDDTILRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK  120
RKYYAAAPTG DAAAGPGGAA DADDERPLKR TSSDGHPXLC FSPGSPSGSD LSDSSHHSLP  180
FVMPSAGAAA AAXITFQQQQ QHVYRPVPRA GGXVLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-39712243158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-39712243158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.182420.0bud| crown| leaf| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151336.11e-118sucrose responsive element binding protein
SwissprotO231604e-75MYB73_ARATH; Transcription factor MYB73
TrEMBLB6TZ851e-117B6TZ85_MAIZE; Sucrose responsive element binding protein
STRINGGRMZM2G050550_P011e-118(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-66myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]