PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004274
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 216aa    MW: 23798.3 Da    PI: 10.3853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-114408PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-114409PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-163887255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr +k +g+WvAeIr+p +   r+r++lg++ ta  Aa+a++ a  +l+g
  Sof004274 38 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATAVAAARAYDTAVFYLRG 87
               69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-303796IPR001471AP2/ERF domain
CDDcd000181.23E-213896No hitNo description
PfamPF008476.3E-103887IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-223897IPR016177DNA-binding domain
SMARTSM003802.5E-3638101IPR001471AP2/ERF domain
PROSITE profilePS5103222.7343895IPR001471AP2/ERF domain
PRINTSPR003675.3E-123950IPR001471AP2/ERF domain
PRINTSPR003675.3E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
XVKMEAEQAA MAAAGAATAS QLGSAHQHHH QQMQPRRQYR GVRMRKWGKW VAEIREPHKR  60
TRIWLGSYAT AVAAARAYDT AVFYLRGRSA RLNFPDEIPS LTLSEGGGGD GEPDTADGGG  120
GGAGTLSAAS IRKKAIEVGS RVDALQTGMM VPPPHHRERQ RHQHQHHHHL PQLRVHAHAE  180
EEQEQKPQPP QRPAWSGRVK NPDLNRAPSP ESSDAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1537100468ATERF1
3gcc_A2e-1537100468ATERF1
5wx9_A7e-1538971474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.157081e-143bud| inflorescence| leaf| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448639.22e-95ethylene-responsive transcription factor ERF008
TrEMBLA0A1B6PNK74e-94A0A1B6PNK7_SORBI; Uncharacterized protein
STRINGSb06g030660.15e-88(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-25DREB and EAR motif protein 2