PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004289
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 216aa    MW: 23722.6 Da    PI: 8.8392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17266111PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-45017PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000356687223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               kC++C++ F +  n++rH r+H
  Sof004289 66 KCTKCSREFCSTINFRRHTRVH 87
               7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6196587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNASRKSNHV SSKDSAETAR DIITTSGQIQ PLKIPDAVAA LAQAAAKAND LPGWPLFSPP  60
KVQLDKCTKC SREFCSTINF RRHTRVHRRT LKIDRDFPKN RDPLAAFWNK LTVDDASTIL  120
SLTGVVVEGV TGSINLTALS SWMCKPGYAS LPMAYARAGS ELLDLIQTKA SMHLPVSSDE  180
LXSLLDEASE KTFLCTNTAA CIPEKGFXFL KIFFFX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.73530.0inflorescence| leaf| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167928.11e-124uncharacterized protein LOC100381642
TrEMBLC0HHR21e-123C0HHR2_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G142502_P021e-120(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-53C2H2-like zinc finger protein