PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004308
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 215aa    MW: 24676.4 Da    PI: 7.1287
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-36404PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-716133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS249.11.8e-763214161373
       GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                +g+ L+++ ee+++p+ef++l     ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+ +n+++Fl rf+e+
  Sof004308   3 VGKMLKSMSEEFKIPLEFTPLPGIYATQVTKEMLDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESHTNTTPFLMRFTET 102
                7999****************97779999************************************************************************ PP

       GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                l+yysa+f+s++++lpre++eri+vE+++l+++ivn++aceg++r+erhe l+kWr+rl++aGF+p+pls+++++ ++ ll+ ++ d y++ee++g+++l
  Sof004308 103 LDYYSAMFESIDTNLPRENKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWRSRLTMAGFRPYPLSSYVNSVIRKLLACYS-DKYTLEEKDGAMLL 201
                *********************************************************************************9999.55************ PP

       GRAS 361 gWkdrpLvsvSaW 373
                gWk+r+L+s+SaW
  Sof004308 202 GWKNRKLISASAW 214
                ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.7621196IPR005202Transcription factor GRAS
PfamPF035146.1E-743214IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
DLVGKMLKSM SEEFKIPLEF TPLPGIYATQ VTKEMLDIRP GEALAVNFTL QLHHTPDESV  60
DVNNPRDGLL RMVKSLSPKV TTLVEQESHT NTTPFLMRFT ETLDYYSAMF ESIDTNLPRE  120
NKERINVEQH CLAKDIVNII ACEGKDRVER HELLGKWRSR LTMAGFRPYP LSSYVNSVIR  180
KLLACYSDKY TLEEKDGAML LGWKNRKLIS ASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-327215167375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.205082e-40bud| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141745.11e-154uncharacterized protein LOC100273879
SwissprotQ69VG11e-145CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1D6EXP91e-153A0A1D6EXP9_MAIZE; Uncharacterized protein
TrEMBLA0A3L6FP911e-153A0A3L6FP91_MAIZE; Chitin-inducible gibberellin-responsive protein 1
TrEMBLB4FXY21e-153B4FXY2_MAIZE; GRAS transcription factor
STRINGGRMZM5G821439_P011e-154(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.23e-97GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]